PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08259g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family E2F/DP
Protein Properties Length: 226aa    MW: 24463.7 Da    PI: 9.6295
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08259g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP41.62e-131011372465
                   E2F_TDP  24 ivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekn 65 
                                + ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k+
  Niben101Scf08259g02004.1 101 WIPLNHSADVL---KV--AKRRIYDITNVLEGIGLIEKTTKS 137
                               57789999999...88..********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.7E-553143IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.26E-999137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.3E-13100137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-11102137IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSTAGENVDL NLNLNLSLAP LHLMSQICSE SRPVARNLFA SSTFVSAPRT VAANHSPLGQ  60
AARARAKKSS KGKASRDAIS AATGINADLL DNLNLGGSYR WIPLNHSADV LKVAKRRIYD  120
ITNVLEGIGL IEKTTKSWFP STRSRGLHDQ VSTLKEPPSD GGRYHELASF QGWKHEDVTI  180
KHTKQLDALT ADEKMDDAYL SSVPPCSLDS TTSKLSGVHK IVPSYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKVAKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783024.12e-79PREDICTED: transcription factor E2FC-like
TrEMBLA0A1U7X7Y45e-78A0A1U7X7Y4_NICSY; transcription factor E2FC-like
STRINGXP_009783024.19e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.11e-12E2F/DP family protein