PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08333g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 241aa    MW: 27764.1 Da    PI: 9.4599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08333g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-1361113154
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++ +hn+ Er+RR+++N  +++Lr+llP+a   ++kK+s  +++  + eYI++L
  Niben101Scf08333g05001.1  61 KKLSHNASERNRRKKMNFLYSTLRSLLPPA-DHQKKKPSFPATVSYVQEYISEL 113
                               6789*************************6.478888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.86560113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1061113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-861118No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1161118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1461133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-766119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSSEWSFEEA QKYDQQNNNI LQNEITNDLF EGLHIDHNSP SSYQQQYSKE KIFHNQSLMA  60
KKLSHNASER NRRKKMNFLY STLRSLLPPA DHQKKKPSFP ATVSYVQEYI SELKKEIEKL  120
SQTKDLLLSK KADSFTQPNN NNNNNQRNTT SSASISATPL CNGQVLVQIS TTQTSFPISQ  180
VFQTLEEDWY VLLNATSFKS SGEKTFHNLH FQMQGTVGME IQSLKTKLLV MFEKNQNRSL  240
V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264786.11e-138PREDICTED: transcription factor ORG2-like isoform X2
TrEMBLA0A1S3YVA51e-135A0A1S3YVA5_TOBAC; transcription factor ORG2-like
TrEMBLA0A1U7WL741e-129A0A1U7WL74_NICSY; uncharacterized protein LOC104228545
STRINGXP_009779323.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-35bHLH family protein