PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08350g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 242aa MW: 28092.7 Da PI: 5.8493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08350g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.6	9.1e-08	123	168	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P +++ ae+L+ + +Y+k Lq Niben101Scf08350g00003.1 123 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATSKYVKFLQ 168 57889*****************955......9***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.6E-12	115	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-12	115	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.11E-10	116	171	No hit	No description
PROSITE profile	PS50888	12.83	118	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-5	123	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-9	124	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MQQLNEFLFD FNYDQSLSCY FDPFFDSNEF LEPNYSSCFV PEMQEYYSDF QMSNPKRQKV 60 FQCHYQDIIT HEGNFPNGPI YQSFSFAENI PMPQLEYFPS APVFDSGCCS SAHEKKEKKM 120 SAQSIAARQR RKKITEKTQE LGKLIPGGHR MNTAEMLQAT SKYVKFLQAQ VGLLEFMGSH 180 QENGKTYETP DLQKLVGSSL IQEKLYSTDN CLVPKVFLEE LDKNHEFQHS HSVDQVKKFI 240 TT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771681.1	1e-147	PREDICTED: transcription factor bHLH53 isoform X2
Refseq	XP_016492779.1	1e-147	PREDICTED: transcription factor bHLH53-like
TrEMBL	A0A1S4BV81	1e-145	A0A1S4BV81_TOBAC; transcription factor bHLH53-like
TrEMBL	A0A1U7W392	1e-145	A0A1U7W392_NICSY; transcription factor bHLH53 isoform X2
STRING	XP_009771680.1	1e-144	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3856	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	4e-26	bHLH family protein