PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08364g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 100aa    MW: 11306.5 Da    PI: 9.5159
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08364g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.67.5e-1737254128
                       NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                               e ++wyf+s+  +       ++r+t +gyW+  g d++++s+ +++++g+kk  vf  g + p+g+kt+W+m+e+rl
  Niben101Scf08364g00014.1   3 EGNKWYFYSRVTN-------ETRITGNGYWQPVGVDESIMSSsNHKVIGTKKYYVFCMGdEPPQGQKTNWLMQEFRL 72 
                               4578999998755.......5799****************9977888**********986789************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.7741100IPR003441NAC domain
SuperFamilySSF1019417.19E-21380IPR003441NAC domain
PfamPF023656.2E-9772IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MAEGNKWYFY SRVTNETRIT GNGYWQPVGV DESIMSSSNH KVIGTKKYYV FCMGDEPPQG  60
QKTNWLMQEF RLSHSSASAT SSSRSTSRRS TTHSTNVCPL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767273.12e-45PREDICTED: NAC transcription factor 25-like
SwissprotQ8GWK61e-18NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1U7VLN74e-44A0A1U7VLN7_NICSY; NAC transcription factor 25-like
STRINGXP_009767273.17e-45(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-21xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]