PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08368g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 654aa    MW: 71403.2 Da    PI: 6.7339
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08368g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.9e-28209262155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Niben101Scf08368g01011.1 209 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 262
                               79*******************.********************************8 PP
2Response_reg77.44.9e-26251331109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl+vdD+ + +++l+q+l+k +y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  
  Niben101Scf08368g01011.1  25 VLVVDDDIVCLRILEQMLRKCKY-SVTTCTQATVALNLLRERRgsFDVVLSDVHMPDMDGFNLLELVGL-EMDLPVIMMSGDGRT 107
                               89*********************.***************999999*******************87754.558************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               +++ + ++ Ga d+l Kp+  eel +
  Niben101Scf08368g01011.1 108 NLVMRGVQHGACDYLIKPIRDEELKN 133
                               ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.9E-1601636IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-3522147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.7E-4122164No hitNo description
SMARTSM004487.2E-3023135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.76224139IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-2325133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.18E-2726138No hitNo description
SuperFamilySSF466891.52E-19206266IPR009057Homeodomain-like
PROSITE profilePS5129411.006206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-29207267IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24209262IPR006447Myb domain, plants
PfamPF002499.4E-7211260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MASMSDDGAT CKSEATDNFP VGLRVLVVDD DIVCLRILEQ MLRKCKYSVT TCTQATVALN  60
LLRERRGSFD VVLSDVHMPD MDGFNLLELV GLEMDLPVIM MSGDGRTNLV MRGVQHGACD  120
YLIKPIRDEE LKNIWQHVVR KKCSFSKEPE YSGSLDDNDR HKRGNDDAEC ASSVIEGADR  180
VLKPQKKKRD AKEEDEMEME NDDPATAKKP RVVWSVELHQ QFVSAVNQLG IDKAVPKRIL  240
ELMNVPGLTR ENVASHLQKF RLYLKRLSGV SQQQGGFPST YFGPIEQNPK LGSLGRFDIQ  300
ALAASGQIPP ETLTALHAEL LGRSSGNLVL PSVEQPDLLQ ASLQQAKCIP VDHLVAYGQP  360
LMKCPPSITN PKLLSQPTMS AEDVHSGFGS WRAKNICMVP SSNLTGLAAP DSNMLMAMMQ  420
HKQQWQKQQQ LEQQQKQSVL SEADHSINVK PSCLVLPSQS PGNFQVGDSP GSISQACSLS  480
KSSIIDYRVL SPQSNNSSAV VQVLDRELKT ACGLNRLSTA ASFTPSVSSC SVHADNSVGL  540
QLHNSSSAFG ASKQLPGFVP NHLGFPVSCN SKPSQILDQR PTRNPGVGKA ASIPSRFAVD  600
ESDSPMCNFN TAKVYTEGTK VKQEPNMNIV ENAKVGPALF QNFPSGDLMS VFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22208268464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312865.10.0two-component response regulator ORR21-like
SwissprotA2XE311e-146ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-146ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLG1APJ80.0G1APJ8_TOBAC; RRB1 type-b response regulator
STRINGXP_009776286.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-112response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]