PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08374g06004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 187aa    MW: 21197.6 Da    PI: 10.2001
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08374g06004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.88.4e-4051129177
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEE..EEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgle..qrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                               +Cq+e+C+adls+ak+yhrrhkvCe h+ka+vv+v+gl+  qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk++
  Niben101Scf08374g06004.1  51 CCQAEKCSADLSDAKQYHRRHKVCECHAKAQVVVVAGLRqrQRFCQQCSRFHELTEFDESKRSCRRRLAGHNERRRKSS 129
                               6***********************************9752278**********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-3144115IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.18849128IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-3551131IPR004333Transcription factor, SBP-box
PfamPF031102.2E-2952127IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
METAGHHNIS TSEDDYKKKR GSCNNNITTD NKHIKKGSLN NGGSSTTQRS CCQAEKCSAD  60
LSDAKQYHRR HKVCECHAKA QVVVVAGLRQ RQRFCQQCSR FHELTEFDES KRSCRRRLAG  120
HNERRRKSSL PSAADQSQIA ETGSSRKGTA QLNNKDINNM MCGQVNDRGR IQISIQENST  180
FKNFHLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3442127184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252458.11e-119PREDICTED: squamosa promoter-binding-like protein 4
SwissprotQ9S7A91e-41SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLA0A1J6IX691e-118A0A1J6IX69_NICAT; Squamosa promoter-binding-like protein 4
STRINGXP_009626190.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-33squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Hyun Y, et al.
    Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles.
    Planta, 2015. 241(1): p. 271-84
    [PMID:25269397]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Ioannidi E, et al.
    Trichome patterning control involves TTG1 interaction with SPL transcription factors.
    Plant Mol. Biol., 2016. 92(6): p. 675-687
    [PMID:27631431]
  5. Jung JH,Lee HJ,Ryu JY,Park CM
    SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering.
    Mol Plant, 2016. 9(12): p. 1647-1659
    [PMID:27815142]