PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08391g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1000aa MW: 109250 Da PI: 5.9675

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08391g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	594	645	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Niben101Scf08391g00003.1 594 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 645 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	577	665	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-26	598	645	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.93E-21	897	983	No hit	No description
PROSITE profile	PS51745	19.489	900	982	IPR000270	PB1 domain
SMART	SM00666	2.2E-21	900	982	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.5E-24	900	981	No hit	No description
Pfam	PF00564	1.4E-17	900	979	IPR000270	PB1 domain
CDD	cd06407	5.03E-30	901	979	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
MERGVGFWAS PTGQMEGVVS FDAGARSSNV DDSFNNVMEI MNLDAYNGWC TSPSAAEQMF 60 ASYAAFSQIN SMSQGYAPFE GLGYTEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDEQLH 120 FVVDSTDGVG LVAKRKHSSQ QADDADIGNS MIVRSPSQPL AERMLRALAM FKESSGAGIL 180 AQIWIPMKNK DQYVLSTCEQ PYLLDQALSG YREVSRKFTF DAETKPGSIP GLPGRVFSSR 240 IPEWTSNVLY YKEAEYLRVK YAVNHEVRGS FALPVFEDDA GEIPCCAVLE LVTMKEKPNF 300 DLEMDHVCRA LQAVNLRSIA PPRLHSQTLS KNQRAALAEI TDVLRAVCHA HKLPLALTWI 360 PCSVTEGEGD ESIRVLARGC NASSNGKCVL CAEDTACYVS DKEMQGFVHA CMEHYLEEGE 420 GIVGKALQSN HPFFYPDVKE YHISEYPLVH HARKFGLNAA VAIRLRSTFT GNDDYILEFF 480 LPISMKGSTE QQLLLNNLSG TMQRICRSLR TVSDAELVGQ GATFGLQDGF APPLPPITLS 540 RRNSQHSLDR NSNSASVAPL GVSDSKSAGM QADGCRGQTM IGSRRQMEKK RSTAEKHVSL 600 SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QHGISRWPSR KINKVNRSLK KIQTVLESVQ 660 GVEGGLKFDP ATGGLIPACS IIQDFDAQQS ISFPCKDVSV KNPNAVFHDA VSVPSTSGID 720 KENSMVKMEE DSYVDGNQLG QSNHINTSSF KGGNKSSIPV SGFCYEPKLA ALDAMSSRPA 780 SQTMPLTNSK NASLGSFHTK EGWRRWGLDN DTLDSFECHF TSQCSYSKAA GDDVDTKMKG 840 DNEMDGDGGV IEHNQASSSA MTDSSNGSES MMNGSSSSSR SRGARKHSKV EANFGDSGST 900 ITLKATYKED TTRFKFDPSA GCFQLYEEVA KRFKLQTGTF QLKYLDDEEE WVMLVNEADL 960 HECLEILDFV GGRTIKFLVC DTSYAMGSSG SSNCFLASGS

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

MERGVGFWAS PTGQMEGVVS FDAGARSSNV DDSFNNVMEI MNLDAYNGWC TSPSAAEQMF  60
ASYAAFSQIN SMSQGYAPFE GLGYTEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDEQLH  120
FVVDSTDGVG LVAKRKHSSQ QADDADIGNS MIVRSPSQPL AERMLRALAM FKESSGAGIL  180
AQIWIPMKNK DQYVLSTCEQ PYLLDQALSG YREVSRKFTF DAETKPGSIP GLPGRVFSSR  240
IPEWTSNVLY YKEAEYLRVK YAVNHEVRGS FALPVFEDDA GEIPCCAVLE LVTMKEKPNF  300
DLEMDHVCRA LQAVNLRSIA PPRLHSQTLS KNQRAALAEI TDVLRAVCHA HKLPLALTWI  360
PCSVTEGEGD ESIRVLARGC NASSNGKCVL CAEDTACYVS DKEMQGFVHA CMEHYLEEGE  420
GIVGKALQSN HPFFYPDVKE YHISEYPLVH HARKFGLNAA VAIRLRSTFT GNDDYILEFF  480
LPISMKGSTE QQLLLNNLSG TMQRICRSLR TVSDAELVGQ GATFGLQDGF APPLPPITLS  540
RRNSQHSLDR NSNSASVAPL GVSDSKSAGM QADGCRGQTM IGSRRQMEKK RSTAEKHVSL  600
SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QHGISRWPSR KINKVNRSLK KIQTVLESVQ  660
GVEGGLKFDP ATGGLIPACS IIQDFDAQQS ISFPCKDVSV KNPNAVFHDA VSVPSTSGID  720
KENSMVKMEE DSYVDGNQLG QSNHINTSSF KGGNKSSIPV SGFCYEPKLA ALDAMSSRPA  780
SQTMPLTNSK NASLGSFHTK EGWRRWGLDN DTLDSFECHF TSQCSYSKAA GDDVDTKMKG  840
DNEMDGDGGV IEHNQASSSA MTDSSNGSES MMNGSSSSSR SRGARKHSKV EANFGDSGST  900
ITLKATYKED TTRFKFDPSA GCFQLYEEVA KRFKLQTGTF QLKYLDDEEE WVMLVNEADL  960
HECLEILDFV GGRTIKFLVC DTSYAMGSSG SSNCFLASGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795771.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795773.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795774.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795775.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795776.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795777.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795778.1	0.0	PREDICTED: protein NLP9-like
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	A0A1U7XXY1	0.0	A0A1U7XXY1_NICSY; protein NLP9-like
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein