PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08394g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 329aa    MW: 36481.4 Da    PI: 5.8932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08394g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.5e-154594255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L ++++Y+++Lq
  Niben101Scf08394g00001.1 45 RSKHSVTEQRRRSKINERFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 94
                              899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1841115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-2242115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.844393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-144598No hitNo description
PfamPF000101.0E-124594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-114999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKGVKGHLEE EEEEEDEVGL KKDTTPPSSS NTKDGKNNDK ASAIRSKHSV TEQRRRSKIN  60
ERFQILRDLI PHTDQKRDTA SFLLEVIQYV QYLQEKVQKH EGSYQPWSSE PTKLMPWRNS  120
HWRMQNLPAH PQALKNGSGP ESTYLGGFDE NPATVTSTVQ PNQQNLIESH PIRDVPIKAM  180
DQHNDLANKA VATHMPLQAG MPVAVPNNCA FSDSQPRPVS DQCPNTIDAL NHHEDLTIDG  240
GTISISSPYS QGLLISLTQA LENTGLDLSQ ATISVQIDFG KRADRGMTSG PSIAKDNENP  300
PLSGNQHMDH FGEANSDEAS DQAQKRLKI
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247319.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA43e-96BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A1J6ITG60.0A0A1J6ITG6_NICAT; Transcription factor bim2
STRINGXP_009760419.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-95BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]