PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08411g00026.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 215aa    MW: 24402.5 Da    PI: 7.622
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08411g00026.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.35.7e-171571942259
                               EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +sYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  Niben101Scf08411g00026.1 157 KSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 194
                               79***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014476.8E-51525No hitNo description
SuperFamilySSF1182906.41E-14146195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-13147194IPR003657WRKY domain
SMARTSM007741.0E-12152195IPR003657WRKY domain
PfamPF031064.4E-12157194IPR003657WRKY domain
PROSITE profilePS5081115.25157196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MHYSSTSINA SEEPPPPPPP LPPPPILSND LSPANFFMQP NTSMLNNHLP LPNNSQVGCD  60
NIDWAGLFSS STNDGIDAGC FMHQTASISN NTEPTTMPNV SITPRNIMME GEQQHQQQQQ  120
HSGYFRDKGK FRKRKYVPPR IAFHTRSTED ILDDGFKSYY RCTHHTCNVK KQIQRLSKDT  180
SIVVTTYEGI HNHPCEKLME TLSPILKQLQ FFARF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598201.11e-121PREDICTED: probable WRKY transcription factor 56
TrEMBLA0A314KV161e-119A0A314KV16_NICAT; Putative wrky transcription factor 56
STRINGXP_009598201.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.16e-41WRKY DNA-binding protein 56