PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08447g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 474aa    MW: 52477.6 Da    PI: 7.0874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08447g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09300347455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf08447g03007.1 300 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 347
                               8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-17294364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-10294351No hitNo description
PROSITE profilePS5088815.516296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16298361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6300347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEKDYFMNGG ITNPPLQFEP TMPTPMLFPS SWNSLHSGQS SDFFLNPNWD HDSTHQFDST  60
LNSIVSSSPS HLISKLSTAC SSPQPPFKNN NINTNNSCYT TPKLHIPNLG NSLPLNPPPL  120
PAVSTDPGFA QRAAKFSCFG SRSFNGRTSP LTHRSAQQLP RVSSSPSLKQ IKNSSQTRME  180
FMSTNLGRPI TNSNESVSEP SGETGPKTPT ELNSTRKRKT ASSGKTKEAA PANGNMGDDN  240
ARTKRCKQVV VEGNETENGT VNMEESKGNN EDDETQNQKP PEPPKDYIHV RARRGEATDS  300
HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV  360
NPSLDFPAEN LLQKDICQPN GSLPQPVFAV DYQQHRQLPQ HTANTIDNSL FRSLGMQLPS  420
LDGLGEYLNQ FPTMCEDDLQ SIVQMGFSQN PNKDLTLQSQ SFPGPQTSHM KIEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219TRKRKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259225.10.0PREDICTED: transcription factor bHLH62-like isoform X2
TrEMBLA0A1S4AM050.0A0A1S4AM05_TOBAC; transcription factor bHLH62-like isoform X1
TrEMBLA0A1U7UNK70.0A0A1U7UNK7_NICSY; transcription factor bHLH62-like
STRINGXP_009757727.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-85bHLH family protein