PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08473g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26071.5 Da    PI: 8.4816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08473g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-1896150256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tk q   Lee Fe++++++ +++++LA+kl++  rqV vWFqNrRa+ k
  Niben101Scf08473g00002.1  96 RKKLRLTKVQSALLEESFEQHSTLNSNQKQHLARKLNVRPRQVEVWFQNRRARTK 150
                               678899***********************************************98 PP
2HD-ZIP_I/II117.76.5e-3896185191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+k q++lLEesFe++++L++++K++lar+L+++prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L  ev+
  Niben101Scf08473g00002.1  96 RKKLRLTKVQSALLEESFEQHSTLNSNQKQHLARKLNVRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRKLYMEVQ 180
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eL+ +l
  Niben101Scf08473g00002.1 181 ELK-AL 185
                               **9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-1787153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-1789155IPR009057Homeodomain-like
PROSITE profilePS5007116.40692152IPR001356Homeobox domain
SMARTSM003891.7E-1494156IPR001356Homeobox domain
CDDcd000861.09E-1596153No hitNo description
PfamPF000469.4E-1696150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PfamPF021834.9E-9152186IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.3E-24152195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGFDDICGTG LALGFGFSSI ANNQRSRKPA ADKGGSLNFE PSLSLSLSKD KSADHLSSST  60
YSNASVKRER DIGCEETEVE RVLSYRVSDD DCSNGRKKLR LTKVQSALLE ESFEQHSTLN  120
SNQKQHLARK LNVRPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRKLYMEVQ  180
ELKALKLAQP LYMQLPAAAT LTVCPSCERV AGAGENAPTK PHFYGPFTNP SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235796.11e-161PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466032e-82HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1J6L0P11e-159A0A1J6L0P1_NICAT; Homeobox-leucine zipper protein hat22
STRINGXP_009796334.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-77HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]