PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08504g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 117aa MW: 13323.3 Da PI: 10.5129

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08504g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.4	1.9e-28	40	102	2	64
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltg 64 a kk rhski T+ g+Rd R+Rls+++a+++F Lqd LGfdk+skt eWLl ++k a+ e ++ Niben101Scf08504g02005.1 40 AYKKNRHSKINTAHGPRDQRMRLSLDVARKLFNLQDFLGFDKASKTMEWLLIKSKSAVNEVVR 102 789*******************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.55	42	100	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.9E-30	42	103	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MAAYSNKDIV ISSTNQDPEE VEIQGIFKNR KGDNKRVAAA YKKNRHSKIN TAHGPRDQRM 60 RLSLDVARKL FNLQDFLGFD KASKTMEWLL IKSKSAVNEV VRGIKAAIEI ENKISNY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244778.1	5e-56	PREDICTED: transcription factor DICHOTOMA-like
Swissprot	Q9SBV9	4e-23	CYCLD_ANTMH; Transcription factor CYCLOIDEA (Fragment)
TrEMBL	A0A1J6JE48	1e-54	A0A1J6JE48_NICAT; Transcription factor teosinte branched 1
STRING	XP_009787900.1	6e-53	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	7e-24	TCP family protein

Publications ? help Back to Top
Vieira CP,Vieira J,Charlesworth D Evolution of the cycloidea gene family in Antirrhinum and Misopates. Mol. Biol. Evol., 1999. 16(11): p. 1474-83 [PMID:10555278] Gubitz T,Caldwell A,Hudson A Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives. Mol. Biol. Evol., 2003. 20(9): p. 1537-44 [PMID:12832647]