PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08508g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 117aa    MW: 12473.2 Da    PI: 8.6963
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08508g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.76.1e-3630117187
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v++i++lq
  Niben101Scf08508g01007.1  30 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARLRDPIYGCVAHIFTLQ 114
                               7***********************9989********************************************************* PP

                    DUF260  85 qql 87 
                               qq+
  Niben101Scf08508g01007.1 115 QQV 117
                               *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.64829117IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3530117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MNGGSCGGAD PEYNNNNNNN NVAGTGGGGP CGACKFLRRK CVRGCIFAPY FDSDQGTAHF  60
AAVHKVFGAS NASKLLLRIP AHKRLDAVVT LCYEALARLR DPIYGCVAHI FTLQQQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3626117797LOB family transfactor Ramosa2.1
5ly0_B5e-3626117797LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803301.11e-67PREDICTED: LOB domain-containing protein 19-like
SwissprotO813227e-52LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1U7YMT43e-66A0A1U7YMT4_NICSY; LOB domain-containing protein 19-like
STRINGXP_009803301.14e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-49LOB domain-containing protein 19