PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08526g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 233aa    MW: 26787.2 Da    PI: 9.3926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08526g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.62.2e-27148206159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk++er+ +d +++++tYeg+Hnhe
  Niben101Scf08526g02006.1 148 LDDGYKWRKYGKKKVKSNTNLRNYYKCSSGGCKVKKRIERDGHDSSYLITTYEGRHNHE 206
                               59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-29136207IPR003657WRKY domain
SuperFamilySSF1182901.7E-24141206IPR003657WRKY domain
PROSITE profilePS5081127.496143208IPR003657WRKY domain
SMARTSM007742.2E-29148207IPR003657WRKY domain
PfamPF031062.3E-21149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLYRSTPTKK PTQILPKSPL KSFLGLIGTM NSTFLETSIS QTGNPSFSSP FLYSHMTQDC  60
GYNFQDCDFN TFQDFESSSF LDHLLVDYSP TNNNFNTSLS ENSILKEISS TNINHLREKS  120
KGGIKKEKMN ERHINAVVFR TKTQLEILDD GYKWRKYGKK KVKSNTNLRN YYKCSSGGCK  180
VKKRIERDGH DSSYLITTYE GRHNHESFSV IYNNEIPLSF LNEWTLQAIP NGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23137206372WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763636.11e-141PREDICTED: probable WRKY transcription factor 51
RefseqXP_016482352.11e-141PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A1S4B0881e-140A0A1S4B088_TOBAC; probable WRKY transcription factor 51
TrEMBLA0A1U7VFG71e-140A0A1U7VFG7_NICSY; probable WRKY transcription factor 51
STRINGXP_009763636.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-28WRKY DNA-binding protein 51