PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08531g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 182aa    MW: 21080.7 Da    PI: 9.3816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08531g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.61.2e-1941433128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLp.k...kvkaeekewy.fFskrdkkyatgkrknr.atk 79 
                                GfrF+Ptd+e +  +L + v+g++++ + +  ++vd+y k ePw++  +   + ++e++  y +F+++ kk+ +++r +r + +
  Niben101Scf08531g03002.1   4 LGFRFRPTDSEGL-MFLLRFVAGQEMHDAGFiTTNVDVYgKQEPWEIYdHgvsCGDNEDNTSYrYFITKLKKK-SNTRYHRsVGN 86 
                               6**********99.7899999999988777735677*99456*****74445433334444442444444443.45788886788 PP

                       NAM  80 sgyWkatgkdkevlsk....kgel....vglkktLvfykg..rapkgektdWvmheyrl 128
                               +g+Wk+  k k+v+ k    +       +g k+ L + ++    ++ +  +W+m+ey+l
  Niben101Scf08531g03002.1  87 KGTWKQDNKGKPVHYKnmgkS--SsvvtIGSKTNLSYKNKefYPEDQKDGHWLMKEYEL 143
                               **************9966541..14556*********95532455666789******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.4872166IPR003441NAC domain
SuperFamilySSF1019414.45E-184164IPR003441NAC domain
PfamPF023653.9E-135143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDQLGFRFRP TDSEGLMFLL RFVAGQEMHD AGFITTNVDV YGKQEPWEIY DHGVSCGDNE  60
DNTSYRYFIT KLKKKSNTRY HRSVGNKGTW KQDNKGKPVH YKNMGKSSSV VTIGSKTNLS  120
YKNKEFYPED QKDGHWLMKE YELSKVILHK FDEDRRDYVL CAIKKLKHAN SSSETSTITT  180
VA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782736.11e-113PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
RefseqXP_016512401.11e-113PREDICTED: protein NTM1-like 9, partial
TrEMBLA0A1J6IHC91e-116A0A1J6IHC9_NICAT; Uncharacterized protein
STRINGXP_009782736.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-11NAC domain containing protein 32