PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08546g05005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 206aa    MW: 23352 Da    PI: 9.1386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08546g05005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17125175255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIrdp     k  r++lg++ t  +Aa+a++ a+ k++g
  Niben101Scf08546g05005.1 125 HYRGVRRRP-WGKYAAEIRDP---ArKGSRVWLGTYETDVDAARAYDCAAFKMRG 175
                               8********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-31124183IPR001471AP2/ERF domain
CDDcd000186.27E-30124183No hitNo description
PfamPF008472.4E-12125175IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22125184IPR016177DNA-binding domain
PROSITE profilePS5103224.5125183IPR001471AP2/ERF domain
SMARTSM003805.6E-36125189IPR001471AP2/ERF domain
PRINTSPR003675.5E-13126137IPR001471AP2/ERF domain
PRINTSPR003675.5E-13165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MTTTRTEDEE LTLELISQHL LGDFTSTESF VNSLSLDHDI CFSTLPDCFQ PVIFTSDQKH  60
NHFNLDNNFS EFETKPNIIR SSTSFTTSVV SNSRIFDDSS LNRTDKKVDG SSYGSSVEEN  120
GKKKHYRGVR RRPWGKYAAE IRDPARKGSR VWLGTYETDV DAARAYDCAA FKMRGRKAIL  180
NFPFDAGNLS PPANIGRKRT KRIGHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-29124184161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804349.11e-137PREDICTED: ethylene-responsive transcription factor ERF106
RefseqXP_016491251.11e-137PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1S4BQV71e-135A0A1S4BQV7_TOBAC; ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1U7YYY11e-135A0A1U7YYY1_NICSY; ethylene-responsive transcription factor ERF106
STRINGXP_009804349.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-44ERF family protein