PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08576g01014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 363aa MW: 39100.6 Da PI: 8.2497

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08576g01014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.3	7.8e-36	69	175	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++ +++ + + ++ Niben101Scf08576g01014.1 69 TPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVKWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTTSP 153 6899************************************************************777773332111111111111 PP TCP 86 ssgkaaksaakskksqksaasal 108 s ++++++++++k+++++++++ Niben101Scf08576g01014.1 154 PS-NRENEENNPQKRRRKSSTNS 175 11.12222222222222222223 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-29	74	171	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.174	75	129	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MSNFHDPDDE CGTSELSNGA GGDSNDKKND SNEYSDEKKV VISALKQEPF DSDHHTLVPA 60 TPIPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE 120 HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT TSPPSNRENE ENNPQKRRRK SSTNSEFIDV 180 GNLNKNVANV SQFAPVTTTP MTVAAGVAPP QGLVPVWAVS NAGVMVPSNA IWMIPGTPNN 240 NINNNNNNFM QYPQLWTITP SVTPVFNLAA TTRTISSFET ATTANINGPP PMMVAEPLST 300 GPKVGSNKSS MAPASLSSSI GDRNNNNNDV KAHKLRDFSL EIYDRKELQF MGGSGNQVTS 360 SKP

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MSNFHDPDDE CGTSELSNGA GGDSNDKKND SNEYSDEKKV VISALKQEPF DSDHHTLVPA  60
TPIPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE  120
HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT TSPPSNRENE ENNPQKRRRK SSTNSEFIDV  180
GNLNKNVANV SQFAPVTTTP MTVAAGVAPP QGLVPVWAVS NAGVMVPSNA IWMIPGTPNN  240
NINNNNNNFM QYPQLWTITP SVTPVFNLAA TTRTISSFET ATTANINGPP PMMVAEPLST  300
GPKVGSNKSS MAPASLSSSI GDRNNNNNDV KAHKLRDFSL EIYDRKELQF MGGSGNQVTS  360
SKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225455.1	0.0	PREDICTED: transcription factor TCP19-like
TrEMBL	A0A314KV59	0.0	A0A314KV59_NICAT; Transcription factor tcp19
STRING	XP_009800537.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13731	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-54	TCP family protein