PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08597g01023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 188aa    MW: 21080.3 Da    PI: 7.9622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08597g01023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-192675255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr  + +gr++AeIrdp     + +r++lg+f+tae+Aa+a++ a+++++g
  Niben101Scf08597g01023.1 26 RYRGVRKQP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARAFHG 75
                              8******99.**********72....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-182582No hitNo description
PfamPF008474.1E-122675IPR001471AP2/ERF domain
PROSITE profilePS5103223.0772683IPR001471AP2/ERF domain
SMARTSM003804.1E-362689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-312683IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-222684IPR016177DNA-binding domain
PRINTSPR003676.5E-112738IPR001471AP2/ERF domain
PRINTSPR003676.5E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPRWKNSETN RSTSVAFRHP KTDLKRYRGV RKQPWGRFAA EIRDPIKKTR VWLGTFDTAE  60
DAARAYDDAA RAFHGPKAKT NFSVFPPYGQ NQFENFNRPA SSSLSSTGES SSGARDFHSR  120
VELTRRITPS AVECYSGCDS SSTVVDDNID GDSSAFCKQP LPFDLNLLPP SDDVDDVHVT  180
PCIFSYFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-192584161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-192582462ATERF1
3gcc_A4e-192582462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767438.11e-105PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767439.11e-105PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767440.11e-105PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503257.11e-105PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503258.11e-105PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503259.11e-105PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLA0A1U7VYH41e-104A0A1U7VYH4_NICSY; ethylene-responsive transcription factor 3-like
TrEMBLR4WAQ51e-104R4WAQ5_TOBAC; Ethylene response factor #44
STRINGXP_009767438.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.16e-20ethylene response factor 8