PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08618g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 289aa    MW: 31402.9 Da    PI: 8.2885
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08618g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26066.75.5e-214192152
                    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpee 52
                              +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FG+sn++k+l++ +++
  Niben101Scf08618g02001.1 41 PCAACKILRRRCAEKCVLAPYFPPSDPIKFTTAHRVFGTSNIIKFLQSSDTT 92
                              7**********************************************96554 PP
2DUF260133.48.9e-421262251100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdP+yG++g i +lq+
  Niben101Scf08618g02001.1 126 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARLRDPIYGCAGAICHLQK 210
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+++la++++e
  Niben101Scf08618g02001.1 211 QVNELQVQLAKAQAE 225
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.82640133IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-194191IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089125.85125226IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-41126223IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESSDITATT ITSPISSRSV SPSSASRPNS PTPLQVVIVS PCAACKILRR RCAEKCVLAP  60
YFPPSDPIKF TTAHRVFGTS NIIKFLQSSD TTATTITSPI YSRSVSPSSA SPPNSPPPLQ  120
VVIVSPCAAC KILRRRCAEK CVLAPYFPPN DPIKFTTAHR VFGASNIIKF LQELPEYQRA  180
DAVSSMVYEA NARLRDPIYG CAGAICHLQK QVNELQVQLA KAQAEIVNMQ CEQANLMALI  240
CMEMTQSPQA SPQNYSLGNL TNITYGNSQS NTTFLDDNSF GSLSETLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-424023310118LOB family transfactor Ramosa2.1
5ly0_B3e-424023310118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610820.11e-127PREDICTED: LOB domain-containing protein 1-like
RefseqXP_016509518.11e-127PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR04e-69LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4D8501e-126A0A1S4D850_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009610820.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-71LOB domain-containing protein 1