PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08621g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 418aa MW: 44799.2 Da PI: 7.745

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08621g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126	4e-39	116	221	5	112
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG ++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ Niben101Scf08621g01003.1 116 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGNKSDGETIEWLLQQAEPAIIAATGTGTNPANFStLNVSLRSSGTTISAP 200 899***************************************************************9997777777777633333 PP TCP 89 ........kaaksaakskksqksaasalnlak 112 + a+++l +++ Niben101Scf08621g01003.1 201 psksaplfI-----------HGGANTMLGFHH 221 333333331...........333333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-36	119	234	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.598	119	173	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MEFMEPHRKK QSGGSSTSGT DHHHHNHQHA QHQQQQQHNQ ETPSSLQLVS SHQSQPDPPT 60 PGSNQPHPHP HGPFMGSISM QSRTLISPPS TNYSSSSTTP TETPTPNNIL STKVVKKPSK 120 DRHTKVDGRG RRIRMPALCA ARVFQLTREL GNKSDGETIE WLLQQAEPAI IAATGTGTNP 180 ANFSTLNVSL RSSGTTISAP PSKSAPLFIH GGANTMLGFH HQLSNAGFGK DPDEDNYMKK 240 RFREDTSGAT SPSGEPERPG GQAHEPGSDS KPGSSQTSSF IPAPAMWAVA PAAGNVGNAF 300 WMLPVSGGTG STTASVGVAQ PDHQLWRSRI GGFEFPVGGR FSPVQLGSMV LQQSQPVQQL 360 GLGVTETNMG MLSSMNNAYN SSGNNRVDLG MNLEQHHHHQ NQTQGSDSGD ENHKDSQL

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MEFMEPHRKK QSGGSSTSGT DHHHHNHQHA QHQQQQQHNQ ETPSSLQLVS SHQSQPDPPT  60
PGSNQPHPHP HGPFMGSISM QSRTLISPPS TNYSSSSTTP TETPTPNNIL STKVVKKPSK  120
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GNKSDGETIE WLLQQAEPAI IAATGTGTNP  180
ANFSTLNVSL RSSGTTISAP PSKSAPLFIH GGANTMLGFH HQLSNAGFGK DPDEDNYMKK  240
RFREDTSGAT SPSGEPERPG GQAHEPGSDS KPGSSQTSSF IPAPAMWAVA PAAGNVGNAF  300
WMLPVSGGTG STTASVGVAQ PDHQLWRSRI GGFEFPVGGR FSPVQLGSMV LQQSQPVQQL  360
GLGVTETNMG MLSSMNNAYN SSGNNRVDLG MNLEQHHHHQ NQTQGSDSGD ENHKDSQL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016500275.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	1e-69	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A1S4CGH4	0.0	A0A1S4CGH4_TOBAC; transcription factor TCP23-like
STRING	XP_009775051.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	3e-59	TCP family protein