PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08653g04009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 498aa    MW: 55509.8 Da    PI: 5.0394
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08653g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.81.5e-102302562854
                   G2-like  28 tPktilelmkvkgLtlehvkSHLQkYR 54 
                                Pk+ilelm+v+gLt+ +v+SHLQk R
  Niben101Scf08653g04009.1 230 YPKEILELMDVPGLTRMQVASHLQKCR 256
                               5************************98 PP
2Response_reg333e-12301341106
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               v++vd ++     +  +le+++y +v+++  +e a+++l + +  +D++++    p++   +ll +  + +  +  i+v + +++
  Niben101Scf08653g04009.1  30 VMLVDHDQETIYEMVDLLESHKY-KVTTVGAAEMAMNILSKGKerYDVMIINAYSPDLLSTRLLGQAVALD--IISIFVCDDNNP 111
                               89**99999999***********.***************777667************98888887776655..88899999999* PP

                               HHHHHHHHTTESEEEESS--HHH CS
              Response_reg  84 edalealkaGakdflsKpfdpee 106
                                +a++al++Ga  +l Kp ++e 
  Niben101Scf08653g04009.1 112 LLAKKALDVGAYLYLKKPLQEEM 134
                               ******************77654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.0E-1227150No hitNo description
SuperFamilySSF521721.42E-1227151IPR011006CheY-like superfamily
SMARTSM004480.002728138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.85229143IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.1E-630133IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.80E-831143No hitNo description
SuperFamilySSF466893.58E-5228256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-10229257IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-9231257IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MFQQEINNQP NEGLVNPMDP YNGMISEVRV MLVDHDQETI YEMVDLLESH KYKVTTVGAA  60
EMAMNILSKG KERYDVMIIN AYSPDLLSTR LLGQAVALDI ISIFVCDDNN PLLAKKALDV  120
GAYLYLKKPL QEEMVKYLWQ FVLKEKLQKE KVKKVLENGE NMINIGDDDE TGENVGDEQG  180
EKSMTNDEEQ NNNHEVENSE SNGKYKLRKK RGRKSTNEAN QGDSHSSGCY PKEILELMDV  240
PGLTRMQVAS HLQKCRNDNW RAPEERKSSR NSSGQGSSSG SQQRSGHRKF GSMPRIQPNI  300
VTNLQQQQRD QEINQRSPPE FQFPPLNNSH IIAGGESSTQ QEQAYRPQLP YVEPQYLSIG  360
SPFNNPRFTQ NNAGGFAQQQ QQNGPFVGMM GQGEGPIIGG TNYRPGFPIN NGPDHNAQNG  420
YNMNVNAAHF GYSGGPMISD MNENVTMNGL GFAAAPYANF QQQFGQPNMT EPSNFVASSN  480
VKPSVPFPGI ANFPDDLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264319.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A314L4770.0A0A314L477_NICAT; Two-component response regulator arr1
STRINGXP_009798262.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-16response regulator 11