PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08680g01010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 461aa    MW: 51358.5 Da    PI: 6.3961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08680g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89e-06124144323
                               ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                               C+ Cgk Fs+ + L  H+rtH
  Niben101Scf08680g01010.1 124 CKECGKEFSSTHALAGHLRTH 144
                               ********************9 PP
2zf-C2H213.40.00023155175121
                               EEETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                               + C++Cgk F +   L  H++
  Niben101Scf08680g01010.1 155 HICEKCGKGFASTRALYGHMK 175
                               68******************8 PP
3zf-C2H210.90.0015384406123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kCp+C k+F++  +L  H + H
  Niben101Scf08680g01010.1 384 HKCPKCFKVFPSGQSLGGHKKAH 406
                               79***********9999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0581032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SMARTSM003550.11122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552122149IPR007087Zinc finger, C2H2
SuperFamilySSF576675.09E-10123175No hitNo description
Gene3DG3DSA:3.30.160.605.1E-6124155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.8E-5124146IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SMARTSM0035518155175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39155182IPR007087Zinc finger, C2H2
PfamPF139120.0042155177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-4156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141384408IPR007087Zinc finger, C2H2
SMARTSM003550.24384406IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-9384406IPR007087Zinc finger, C2H2
PROSITE patternPS000280386406IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEEIPEVQKH KCRFCNQSCS SGRSLGGHMR VHLDLISAEK KQKIEAEKKM GSEEEEEEGD  60
NHFNNLSISE QSDSGMSQEK VNNIGTNDCV DDIDSIGYGL RENPRKSWRV SELKLSSLKT  120
KNLCKECGKE FSSTHALAGH LRTHSKNGTT TEKSHICEKC GKGFASTRAL YGHMKAYVKR  180
SRDDQESESS KQSLSDFETV CPIRKKRSKI KYKIDANASS SSAISEVEEM EEAAKTLMML  240
SCGMRHWDEY LSISKPLKNE NAKNLSQAGC SDSGCVDSYE KKCENEVIND EFSGNLMMIN  300
TEITRVCYST TILGLDNDPR EDLAFLNSCS LKNGGVNFQV LNQKTNFVSD VVNSQLESID  360
DSPVELGTIG VMRTSTEPIK SRDHKCPKCF KVFPSGQSLG GHKKAHNNGF NESKTKEIMV  420
KKLEDLADNH RSFDLNNPVN VVDGGEKDVV ELNLWWVGGS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757607.10.0PREDICTED: zinc finger protein ZAT1-like
RefseqXP_016446098.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A314KUK40.0A0A314KUK4_NICAT; Uncharacterized protein
STRINGXP_009757607.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-09C2H2-like zinc finger protein