PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08700g00008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 175aa MW: 19852.6 Da PI: 6.3376

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08700g00008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Niben101Scf08700g00008.1 36 YECVFCKRGFNTAQALGGHMNIH 58 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.5E-4	34	62	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.22E-6	34	62	No hit	No description
Pfam	PF13912	1.5E-5	36	60	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.616	36	63	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	38	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MESFHNQDYS INNSSTTHID QEVDQPTFEN GVGRSYECVF CKRGFNTAQA LGGHMNIHRK 60 DRIRNRPINQ SSINNSNNKY DQIQNHVVAA AHLSYRTYFP AHSSTSTTGP VLVHDYNSGL 120 QENNNNRQCL NLFGDDWRVS LSLEFGAAGH VRETMEKNKG TEDDLDLELR LGHDP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016438285.1	1e-113	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S3XEJ4	1e-111	A0A1S3XEJ4_TOBAC; transcriptional regulator SUPERMAN-like
STRING	XP_009625208.1	1e-112	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-11	C2H2 family protein