PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08776g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 65aa    MW: 7661.05 Da    PI: 12.066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08776g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-181764253
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                               y+GVr +  +g+Wv+eIr+   +gk+ r++lg+f t+++Aa+a++ a++++
  Niben101Scf08776g00003.1 17 IYRGVRMRN-WGKWVSEIRE---RGKKSRIWLGTFPTPQMAARAHDVAALAI 64
                              69****998.*******999...3567*********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.52E-231664No hitNo description
SuperFamilySSF541717.85E-181764IPR016177DNA-binding domain
PfamPF008471.2E-131764IPR001471AP2/ERF domain
SMARTSM003806.6E-201765IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-251764IPR001471AP2/ERF domain
PROSITE profilePS5103219.2961765IPR001471AP2/ERF domain
PRINTSPR003671.2E-101829IPR001471AP2/ERF domain
PRINTSPR003671.2E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MEAKKIKRIR ESNKHTIYRG VRMRNWGKWV SEIRERGKKS RIWLGTFPTP QMAARAHDVA  60
ALAIK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468873.12e-37PREDICTED: dehydration-responsive element-binding protein 3-like, partial
SwissprotQ9LYD31e-30DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3ZX014e-36A0A1S3ZX01_TOBAC; dehydration-responsive element-binding protein 3-like
STRINGXP_009801170.13e-36(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]