PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08782g02017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 181aa    MW: 19643.3 Da    PI: 10.5432
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08782g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.1e-182961133
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                              C+ Cgtt TplWR gp g+k+LCnaCG++ rkk
  Niben101Scf08782g02017.1 29 CADCGTTRTPLWRGGPTGPKSLCNACGIKSRKK 61
                              *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-132373IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.9142359IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-122662No hitNo description
Gene3DG3DSA:3.30.50.101.5E-142861IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.10E-112879No hitNo description
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003206.3E-162962IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVDLSDKGIR SEEMSSETSS PERSDVKTCA DCGTTRTPLW RGGPTGPKSL CNACGIKSRK  60
KIRALLGLNK EDKKPKKSMA FGNKSIGLQH QSCNSSSNSS SGDSSRSSNF GKKTVSSSLK  120
SKVFPFGREV ILQKPRSSST QKRKLGEVEQ AAFLLMALSC GSFCNKYNNY ASIRNKLEST  180
I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245478.19e-97PREDICTED: GATA transcription factor 15-like
TrEMBLA0A1J6J7K22e-95A0A1J6J7K2_NICAT; Gata transcription factor 15
STRINGXP_009768393.12e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-28GATA transcription factor 15