PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08804g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-X1
Protein Properties Length: 1255aa    MW: 136219 Da    PI: 8.2228
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08804g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.74.2e-07580597118
                  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                               CG H+Cq+ CH G+C pC
  Niben101Scf08804g01009.1 580 CGVHRCQAVCHSGDCAPC 597
                               ****************** PP
2zf-NF-X119.12.9e-06676693118
                  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                               CG+H+Cq+lCH G CppC
  Niben101Scf08804g01009.1 676 CGQHSCQSLCHSGHCPPC 693
                               ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.77E-7171242No hitNo description
PROSITE profilePS500168.831180241IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.48183239IPR001841Zinc finger, RING-type
PROSITE patternPS013590183238IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.30E-6272333No hitNo description
SMARTSM004380.023295313IPR000967Zinc finger, NF-X1-type
PfamPF014229.5297312IPR000967Zinc finger, NF-X1-type
CDDcd060086.56E-11340388No hitNo description
SMARTSM004380.063350369IPR000967Zinc finger, NF-X1-type
PfamPF014220.0036350367IPR000967Zinc finger, NF-X1-type
CDDcd060082.09E-8404449No hitNo description
SMARTSM004385.4E-4414433IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4414431IPR000967Zinc finger, NF-X1-type
CDDcd060089.08E-14570618No hitNo description
SMARTSM004383.2E-5580599IPR000967Zinc finger, NF-X1-type
PfamPF014222.2E-6580597IPR000967Zinc finger, NF-X1-type
SMARTSM00438190638672IPR000967Zinc finger, NF-X1-type
PfamPF0142221638649IPR000967Zinc finger, NF-X1-type
CDDcd060083.58E-9666718No hitNo description
SMARTSM004382.4E-4676695IPR000967Zinc finger, NF-X1-type
PfamPF014225.1E-4676693IPR000967Zinc finger, NF-X1-type
CDDcd060084.80E-5723771No hitNo description
SMARTSM004380.34733751IPR000967Zinc finger, NF-X1-type
SMARTSM004380.022786816IPR000967Zinc finger, NF-X1-type
PfamPF014226.4E-4786801IPR000967Zinc finger, NF-X1-type
PfamPF014225.1818844IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021825846IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.7E-410651110IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1255 aa     Download sequence    Send to blast
LNSFDLGRSN LPLDRDIDYF QILSQNMSLS SARNNRRNNN SNRPGNNPVQ SARREWVPRG  60
SSATTTVSAA PVPTTVTTTV VSPVFNLNGS SSSGNGREKD NMSVAPVNRR NQTYVGPNLN  120
KGPTYARRER ERGRENHNYQ ENRVERAVNG RINQGEHKRL KDPNLPQLVQ EIQEKLLKGN  180
IECMICYDMV RRSAPVWSCS SCYSIFHLNC IKKWARAPTS VDTSAEKNQG FNWRCPGCQS  240
VQLTSSKEIR YICFCGKRPD PPSDLYLTPH SCGEPCGKKL EKELPGHDLS EEDLCPHVCV  300
LQCHPGPCPP CKAFAPARSC PCGKEVITTR CSDCKSVLTC GQQCGKLLDC GRHWCEQTCH  360
VGPCGHCQVI VNAYCFCKKK TEVLLCGDMG VKGDIKIEDG VFSCSSACGR KLSCGNHVCL  420
ELCHPGPCGD CALLPSKIKT CCCGKSSLED ERRSCLDPIP TCSKVCGYIA VKRCVILVTV  480
HHVLFLSLKD AAVGQLLEQW SVTKRRQKMR SSLVIDLAGK RRTVEGTVAV SDVALFLIQK  540
XLPSKVKTCC CGKSSLEDER HSCLDPIPTC SNVCGKSLRC GVHRCQAVCH SGDCAPCLVP  600
VTQRCRCGST SRTVECYKTQ AEDEKFTCDR PCGQKKNCGR HRCSERCCPL SNPKNSVTGG  660
WNPHFCSMPC EKKLRCGQHS CQSLCHSGHC PPCFETIFTD LTCACGRTSI PPPLPCGTPS  720
PSCQLPCSVP QPCGHPPTHS CHFGDCLPCA VPVAKECVGG HVILRNIPCG SKDIRCNKLC  780
GKTRQCGLHA CARTCHSSPC DFSAGPSNGS RASCGQTCGA PRRDCRHTCT ALCHPSSPCP  840
DVRCEFPVTI TCSCGRVTAN VPCDAGGPVN DSVFEASIIH KLPSPLQPIE INGKKVPLGQ  900
RKLTCDDECA KMEKKKVLSD AFGITPPNLE ALHFGDAAVS EVLGDLLRRD PKWVLSIEER  960
CKCLVLGRSR GGVNALKVHV FCPMLKEKRD AVRLIAARWK LSVNAAGWEP KRFITVHVTP  1020
KSKAPARILG AKGCTVNNIA QPAVFDSLVD MDPRLVVALF DLPRDADISA LVLRFGGECE  1080
LVWLNDKNAL AVFSDPARAA TAMRRLDQGS AYCGAAVVPQ SGVASAVTSA TNAWGVSGAA  1140
KDGGGAALKG NPWKKAVVQE PHLRESPWDL EEWSKNPTDS APSVWRTNEA TTGASSNRCS  1200
LLEPEMSSNL PRSSITIKEP VTEPGLGGSA LPPKPQDVGV DEMTDVVDDW EKAYD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1503521KRRQKMRSSLVIDLAGKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622484.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1S3YGC00.0A0A1S3YGC0_TOBAC; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1U7VYN90.0A0A1U7VYN9_NICSY; NF-X1-type zinc finger protein NFXL1
STRINGXP_009622484.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1