PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08933g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 149aa    MW: 17121.6 Da    PI: 7.8974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08933g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf08933g00003.1 14 KGAWTKEEDERLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                              79******************************99************97 PP
2Myb_DNA-binding23.31.5e-076795130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              rg++T+eEdel+++++ +lG++  k+ +r 
  Niben101Scf08933g00003.1 67 RGNFTEEEDELIIKLHSLLGNK-RKLLSRG 95
                              89*******************9.7776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.406965IPR017930Myb domain
SMARTSM007175.1E-141363IPR001005SANT/Myb domain
PfamPF002497.8E-161461IPR001005SANT/Myb domain
SuperFamilySSF466892.71E-231589IPR009057Homeodomain-like
CDDcd001671.79E-101661No hitNo description
PROSITE profilePS500905.00662102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-106588IPR009057Homeodomain-like
SMARTSM007173166113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKRK LLSRGIDPTT HRLMNEATGT QKMTTISFAA  120
DDDQEQNIKI KPELVETMSK EEKDHEIQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-17138826100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231332.17e-95PREDICTED: myb-related protein 308-like
SwissprotP813931e-73MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1J6J1B22e-93A0A1J6J1B2_NICAT; Transcription repressor myb4
STRINGXP_009764613.12e-93(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-68myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]