PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08954g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 622aa    MW: 72111.5 Da    PI: 7.6153
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08954g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1798.7e-2570161190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                               ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke+    ++w+v++++
  Niben101Scf08954g02005.1  70 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKENvdgVAQWYVSQFS 153
                               69********************8888.********************************************9966789******* PP

                      FAR1  83 leHnHela 90 
                               + HnHel 
  Niben101Scf08954g02005.1 154 NVHNHELL 161
                               ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2270161IPR004330FAR1 DNA binding domain
PfamPF105511.0E-24293385IPR018289MULE transposase domain
PROSITE profilePS509669.78565600IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-5573596IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MAAKPLNNIW IRRQQCPCGD WKCYIKADGD DQAVNVSLTM KSETASSSSQ DAVFTPYVGQ  60
IFKSDAEAFE YYSNFARKNG FSIRKARSTE SQNLGIYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEN VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEADQ  180
ERILLLSKAG FPVNRIVKVL ELEKGVQPGH LPFIEKDVRN FVRTCKKTVQ ENDALITEKR  240
ENDLLELLEA CKASQQKDEG FIYSFTTDDN GRVENIAWSY GHSLRAYSFF GDVITFDTTY  300
RSITYNMVLG VLFGIDNNGN AIFLGCVLLQ DETSQSFSWA LQSFVRFMRG KQPQTIVTDI  360
DSGLRDAIAS EMPNTKHVIC LWQVLSKLSS WFSLPLGLQY PDFKSEFEML CRLENVEDFE  420
HQWNHLVARF GVGSDKHIAL LLSYRTSWPI SYMRNFFLAR TMTIEYWKLI ETFMKNILSP  480
QSSLLLFFEQ VGLVSNCGTH NKEKRLYMPA KTCLPLEEHA RTVLTPFAFN VMQHEIMLSM  540
QYAITEMANS SYLARHYKKM EAECLVIWIP EDEEVHCSCK EFEHSGILCR HSIRMLVSKN  600
YFQIPEKYFP LRWRREFLSS LG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512038.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_016512039.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S4DFC20.0A0A1S4DFC2_TOBAC; Uncharacterized protein
STRINGXP_009776059.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]