PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08973g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 387aa MW: 43898.9 Da PI: 6.5237

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08973g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	88	128	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 k+ rr+++NReAAr+sR+RKka++++Le+ +L + + el Niben101Scf08973g00012.1 88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLEQ----EL 128 789*************************96666655554....33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	82	134	No hit	No description
SMART	SM00338	9.3E-7	84	148	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	86	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.73E-6	88	132	No hit	No description
Pfam	PF00170	1.3E-7	88	126	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	91	106	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.5E-29	189	263	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MNSSTYTHFV ASRRMGICDP IHQLGMWDDF NGSFPSTSAT MILEVDKCLE DQIPIMEKRL 60 ENETEDTSHG TVGTSNRYEP ETSKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LIQLEQELER ARKQGEKNLI NQTNILQQGL YAGGGLDASQ LSYSGTASSG TAAFDMEYGH 180 WVEEQTRQTN ELRSALLSQI GEAELRIIVD GYLNHYFDLF RMKATAAKAD VLYIMSGMWK 240 TSAERFFMWI GGFRPSELLK VLTPHLELLT EQQLREVCNL TQSCQQAEDA LSQGMVKLHQ 300 ILAEAVAAGR LGEGNYTLPQ MGPAIEKLEA LVRFVNQADH LRQETLQQMS RILNTYQAAQ 360 GLLALGEYFE RLRVLSSQWA TRLREPT

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MNSSTYTHFV ASRRMGICDP IHQLGMWDDF NGSFPSTSAT MILEVDKCLE DQIPIMEKRL  60
ENETEDTSHG TVGTSNRYEP ETSKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELER ARKQGEKNLI NQTNILQQGL YAGGGLDASQ LSYSGTASSG TAAFDMEYGH  180
WVEEQTRQTN ELRSALLSQI GEAELRIIVD GYLNHYFDLF RMKATAAKAD VLYIMSGMWK  240
TSAERFFMWI GGFRPSELLK VLTPHLELLT EQQLREVCNL TQSCQQAEDA LSQGMVKLHQ  300
ILAEAVAAGR LGEGNYTLPQ MGPAIEKLEA LVRFVNQADH LRQETLQQMS RILNTYQAAQ  360
GLLALGEYFE RLRVLSSQWA TRLREPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019254296.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A1J6HZ96	0.0	A0A1J6HZ96_NICAT; Tgacg-sequence-specific dna-binding protein tga-1a
STRING	XP_009802013.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-154	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]