PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08995g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 243aa    MW: 28242.9 Da    PI: 7.2982
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08995g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.27.6e-26281102102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+y ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+Y                  weF+++ F
  Niben101Scf08995g00012.1  28 FLLKTYMLVEDPATDDVVSWNSDGTAFVVWKPAEFARDLLPTLFKHSNFSSFVRQLNTY------------------WEFSNDRF 94 
                               9*********************************************************9..................99****** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +kg+k+ll++i+r+k 
  Niben101Scf08995g00012.1  95 RKGEKDLLCDIRRRKA 110
                               ***********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-2721103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.21E-2923108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-4124108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-132851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2228108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-136678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-137991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMVVLEEVQS DEKSLLLEYV RKSSPSPFLL KTYMLVEDPA TDDVVSWNSD GTAFVVWKPA  60
EFARDLLPTL FKHSNFSSFV RQLNTYWEFS NDRFRKGEKD LLCDIRRRKA WTNRHQPNNN  120
NNNNNNGQSQ CANSNKKETE DQRSSSSTTS SSELTILVDE NKRLKMENGV LSSELSVMKN  180
KCKELIDIVT IFAKNPEKEE KKQQDERPML FGVRLEVQEE MERKRKRAEL TETASVFLSQ  240
LCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B4e-18261082104Putative transcription factor
5d5x_B4e-18261082104Putative transcription factor
5d5x_E4e-18261082104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796891.11e-156PREDICTED: heat stress transcription factor B-3-like
RefseqXP_016514635.11e-156PREDICTED: heat stress transcription factor B-3-like
SwissprotO222301e-56HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S4DML21e-154A0A1S4DML2_TOBAC; heat stress transcription factor B-3-like
TrEMBLA0A1U7Y4K81e-154A0A1U7Y4K8_NICSY; heat stress transcription factor B-3-like
STRINGXP_009796891.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.19e-54heat shock transcription factor B3