PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09004g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 195aa    MW: 22139.1 Da    PI: 9.8054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09004g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20122173156
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               ++y+GVr++k +g+W+AeIrd      +++r +lg+f+taeeAa a+++a+ +++g+
  Niben101Scf09004g00001.1 122 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIRGA 173
                               59*******9.**********55....35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.72E-30122178No hitNo description
SMARTSM003804.9E-33123186IPR001471AP2/ERF domain
PROSITE profilePS5103222.062123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-29123178IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-21123179IPR016177DNA-binding domain
PfamPF008472.8E-15123172IPR001471AP2/ERF domain
PRINTSPR003671.0E-11124135IPR001471AP2/ERF domain
PRINTSPR003671.0E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTVSRELIRS KPRICYAWMA SQQEHQKKEA VEKPPEIDVV EKFNNQVGES SGALPHTVRI  60
HVTDRDATDS SSDEEKAGGE KSEQHGKTCV KEIIIENGKP EVTPKKKSKE KKDITVLQGD  120
VKKYRGVRQR KWGKWAAEIR DARRKTRLWL GTFDTAEEAA LAYDKAAIEI RGANTFTNIL  180
KPPPREMLQT DDARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-19122179462ATERF1
3gcc_A5e-19122179462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252206.11e-96PREDICTED: uncharacterized protein LOC109231099 isoform X1
SwissprotQ9SUE31e-30CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1J6J7L83e-95A0A1J6J7L8_NICAT; Ethylene-responsive transcription factor crf1
STRINGXP_009783399.12e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-21cytokinin response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]