PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09038g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 178aa MW: 19829.5 Da PI: 8.7314

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09038g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	85.6	1.2e-26	100	163	2	65
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 a kk rhski T+ g Rd R+Rls+++a +fF Lqd Gf k+skt+eWLl+++k a+ e Niben101Scf09038g00001.1 100 AYKKYRHSKINTAHGCRDQRMRLSLDVAHKFFNLQDLFGFNKASKTVEWLLTKSKSAVNEVFHG 163 789*******************************************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-29	102	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.365	102	160	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MVHIHGDSAS NRNKETLQIT VLQINSGLVL LVKNTSVEVP CKYPATFCLT SNYQLAVVTS 60 LAADSNKDIV ISSTNQDPEE VEIQGSCKNK KGDNKRVAAA YKKYRHSKIN TAHGCRDQRM 120 RLSLDVAHKF FNLQDLFGFN KASKTVEWLL TKSKSAVNEV FHGINKENCS TANEIELD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244778.1	4e-63	PREDICTED: transcription factor DICHOTOMA-like
TrEMBL	A0A1J6JE48	1e-61	A0A1J6JE48_NICAT; Transcription factor teosinte branched 1
STRING	XP_009787900.1	3e-58	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-22	TCP family protein