PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09100g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SAP
Protein Properties Length: 299aa    MW: 34634.1 Da    PI: 6.5003
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09100g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP115.84.5e-3618679164
                       SAP  79 vcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkyl 163
                               vcstw +vsrsdllwq+lt ++W+r +llr+tW++eyiy+h+t +nfr+r+y y tl+f  a++++dn++d+lsCr+lalsd++l
  Niben101Scf09100g03001.1   1 VCSTWSSVSRSDLLWQNLTLQLWNRLHLLRQTWHDEYIYWHQTCNNFRQRTYIYHTLHFVHANNNDDNNNDSLSCRRLALSDHHL 85 
                               8***********************************************************************************9 PP

                       SAP 164 a 164
                               +
  Niben101Scf09100g03001.1  86 S 86 
                               6 PP
2SAP219.91.2e-6784298182389
                       SAP 182 hvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGl...... 260
                               h+stf+ q r rlGr+sra+sGi++ d ++vfa+ldGdihvav+ g  a+++rra+lGdvvnd al+dfaG+++Wwv l      
  Niben101Scf09100g03001.1  84 HLSTFHFQIRYRLGRYSRAISGIILFDESVVFASLDGDIHVAVVGG--ATPTRRAHLGDVVNDSALMDFAGCDQWWVVLsrkqfv 166
                               9*******************************************99..78**************************987555544 PP

                       SAP 261 ..ya.....GvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvter.etavaCtslrlvvfdlrnqgvvlr 337
                                 y+      vpGrafhiW++eteel+fvG  ltdPeavmGWh+lteltel    r     +           + +l nqg++++
  Niben101Scf09100g03001.1 167 fvYVlsfciRVPGRAFHIWNSETEELIFVGRDLTDPEAVMGWHLLTELTELDHDSRYCRVmHWPT------PCCNQLTNQGLIIQ 245
                               33222222368**************************************9876666554312223......34678********* PP

                       SAP 338 eeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgv 389
                               e+++++ liv+s+da+ne +v+vd + vat++rve+lee crf+vrg +qrgv
  Niben101Scf09100g03001.1 246 ERSFQQVLIVGSFDATNELLVAVDGQSVATIHRVEDLEEPCRFNVRGaSQRGV 298
                               ***********************************************899987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.502.4E-4175No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
VCSTWSSVSR SDLLWQNLTL QLWNRLHLLR QTWHDEYIYW HQTCNNFRQR TYIYHTLHFV  60
HANNNDDNNN DSLSCRRLAL SDHHLSTFHF QIRYRLGRYS RAISGIILFD ESVVFASLDG  120
DIHVAVVGGA TPTRRAHLGD VVNDSALMDF AGCDQWWVVL SRKQFVFVYV LSFCIRVPGR  180
AFHIWNSETE ELIFVGRDLT DPEAVMGWHL LTELTELDHD SRYCRVMHWP TPCCNQLTNQ  240
GLIIQERSFQ QVLIVGSFDA TNELLVAVDG QSVATIHRVE DLEEPCRFNV RGASQRGVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251455.11e-150PREDICTED: transcriptional regulator STERILE APETALA-like isoform X1
TrEMBLA0A1J6I5001e-148A0A1J6I500_NICAT; Transcriptional regulator sterile apetala
STRINGXP_009803646.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.13e-71SAP family protein