PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09133g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 187aa    MW: 19613.5 Da    PI: 9.727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09133g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-12131155126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC +fa+ G C +GdrC+FaHg
  Niben101Scf09133g01003.1 131 FKTKLCENFAK-GSCTFGDRCHFAHG 155
                               69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547912.05E-1532108IPR004088K Homology domain, type 1
SMARTSM003227.1E-1236106IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.1E-1637106IPR004088K Homology domain, type 1
PROSITE profilePS5008414.23637101IPR004088K Homology domain, type 1
CDDcd001051.27E-1239101No hitNo description
PfamPF000131.4E-1139103IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-16126161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596130157IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8130156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-9130160IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10131155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPSQEEPRAM GVGPVPGRFG GRIEPAVSGP AASFGTSATA KISVDASLAG AIIGKGGVHS  60
KQICRQTGAK LAIRDHETDK NLRNIELEGT FEQISQASAM VRELINSLGS VGCPGRTPVV  120
PGGAAPPGSN FKTKLCENFA KGSCTFGDRC HFAHGAAELR KTGKIYEKNG CRKVDFTKLI  180
MIEKITS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266162.11e-111PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9FG301e-60C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A314L1681e-109A0A314L168_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009767111.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-57C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]