PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09153g05012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 75aa    MW: 8746.15 Da    PI: 5.8861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09153g05012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.3e-11444345
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                               +++eE+ l+++ +++ G++ W++Ia +++ gRtl+++  + +
  Niben101Scf09153g05012.1  4 EFSEEEEMLIAKMFNLVGKR-WSLIAGRIP-GRTLEEIEKYCN 44
                              69******************.*********.******988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-5149IPR001005SANT/Myb domain
CDDcd001671.24E-6444No hitNo description
Gene3DG3DSA:1.10.10.602.7E-11445IPR009057Homeodomain-like
PfamPF002497.0E-9444IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-7545IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MILEFSEEEE MLIAKMFNLV GKRWSLIAGR IPGRTLEEIE KYCNSRYVIH KPAKCLKISS  60
SINDEETRKL ENDLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604372.12e-40PREDICTED: MYB-like transcription factor ETC3 isoform X1
TrEMBLA0A1S4BEV87e-39A0A1S4BEV8_TOBAC; MYB-like transcription factor ETC3 isoform X1
STRINGXP_009604372.11e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.12e-15MYB_related family protein