PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09191g02017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 223aa    MW: 25865 Da    PI: 8.4297
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09191g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.11.6e-349104195
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 
                               aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e+  r++a++sl++eA +r++dPv G +g ++++ 
  Niben101Scf09191g02017.1   9 ACASCKHQRKKCTENCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDYdRQKAVESLIWEAFCRQKDPVFGPYGEYKRIY 93 
                               7************************************************88777******************************* PP

                    DUF260  85 qqleqlkaela 95 
                               ++l+  k++ +
  Niben101Scf09191g02017.1  94 EELKLYKSQYQ 104
                               ***99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4998110IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-339105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MQKPSGTAAC ASCKHQRKKC TENCVLAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED  60
YDRQKAVESL IWEAFCRQKD PVFGPYGEYK RIYEELKLYK SQYQQILQMP ISQGSDNNGI  120
VYEATTQGLI NGWNINKRND NNLLYINENS TVESWSSYNN KNNPLHHHVQ NIEKLRTENS  180
NDSIVIVPQP QAYNEFNQQY FLAGQYNPID SKSRESKLWE DPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-22487688LOB family transfactor Ramosa2.1
5ly0_B3e-22487688LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234724.11e-160PREDICTED: LOB domain-containing protein 2-like
RefseqXP_019266755.11e-160PREDICTED: LOB domain-containing protein 2-like
SwissprotQ9LNB93e-41LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A1U7W8841e-156A0A1U7W884_NICSY; LOB domain-containing protein 2-like
STRINGXP_009770460.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-43LOB domain-containing protein 2