PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09236g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 219aa    MW: 24137.1 Da    PI: 8.7432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09236g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.3e-203078355
                       AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAaka++aa++ l+g
  Niben101Scf09236g00001.1 30 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAAKAYDAAARTLRG 78
                              8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-182986No hitNo description
PfamPF008472.0E-132978IPR001471AP2/ERF domain
SMARTSM003805.0E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103223.1822986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-313086IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-223087IPR016177DNA-binding domain
PRINTSPR003672.5E-103041IPR001471AP2/ERF domain
PRINTSPR003672.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRRGRATAAA KQAAEAAPAA GSGGLKEIRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD  60
SAEEAAKAYD AAARTLRGPK AKTNFPLPPY SHFNQTVNPN DPFIDPRLYS LENHPIVIQR  120
PTSSSMSSTV ESFSGPRPPP RQQTAVLPSR KHPRSPPVVP DDCRSDCDSS SSVVEDGNCD  180
NEYDNIVSSV FRKPLSFDLN FPPPMDADSD DLHCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-202486972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251799.11e-157PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS89e-72ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A1J6IN341e-155A0A1J6IN34_NICAT; Ethylene-responsive transcription factor 3
STRINGXP_009770784.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-33ethylene responsive element binding factor 3