PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09353g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 805aa    MW: 86886.2 Da    PI: 5.5858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09353g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16613659455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L++l+P++      K++Ka++L +A+eY+k Lq
  Niben101Scf09353g03003.1 613 VHNLSERRRRDRINEKMRALQDLIPNC-----NKVDKASMLDEAIEYLKTLQ 659
                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.61E-17605663No hitNo description
Gene3DG3DSA:4.10.280.107.6E-21606667IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-21606675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.374609658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13613659IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-18615664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MPLSEFLKMA RGKLESGQEK RSSTTDPSSS LEDELVELVW ENGQIVMQSQ SSRAKKSPPF  60
SIHTSSSSRV KDKFTGNSST TNIGKFGVMD SMFDNMPLSA PNDEMELTEE DEVVPWLSYS  120
ANDSPQQDYN SPLFPEISGL MVNEPSGKRG FASMDKRGIS NQMNGASHSV PIRNIVNSEQ  180
GNASKLSPST FNLLEDELVE LVWENGQIVM QSQSSRAKKS PPFSIHTSSS SRVKDKFTGN  240
SSTTNIGKFG VMDSMFDNMP LSAPNDEMEL TEEDEVVPWL SYSANDSPQQ DYNSPLFPEI  300
SGLMVNEPSG KRGFASMDKR GISNQMNGAS HSVPIRNIVN SEQGNASKLS PSTFNLLCSG  360
APKKSSPPIL PLRSRVLDII SSNSSCNMPV SAFGYSNSSQ ASAGVIKSMK MQKQNIPGNS  420
SSLLNFAPFS RPITGGSAVS GSSTIGARGA IERENGGSSR NRVSEVPFES YFSSEKENDV  480
HSPPYMASSK VESKGSVGLH KMACPIEQSD NLCGDSPSNN DMSRDQFTCS NAIKEFPDGE  540
KNVEPVVVCS SVCSGSSAER ASSDHPHTLK RKTRDNEESE FQSEDIEEES VGIKSAYPVR  600
GGAGSKRSRA AEVHNLSERR RRDRINEKMR ALQDLIPNCN KVDKASMLDE AIEYLKTLQV  660
QVQMMSMGAG LCAPPMMFPA GIQYMHAANV PQFSPMGLGM GMGFGMGKLE MNGGSPGCSI  720
YPIPTMQGAH LRSPPVSGSA TFPGVAGSNL HSFRHPGQGL PVSVSPASLF PMAGQPSTNA  780
AEFIQTYGIL PTLDPETKDT LRTQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1617622ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794217.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_016510646.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_016510647.10.0PREDICTED: transcription factor PIF3-like
TrEMBLA0A1S4DB630.0A0A1S4DB63_TOBAC; transcription factor PIF3-like
TrEMBLA0A1U7XQ570.0A0A1U7XQ57_NICSY; transcription factor PIF3-like
STRINGXP_009794217.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-39phytochrome interacting factor 3