PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09367g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 295aa    MW: 32504.9 Da    PI: 9.73
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09367g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.2e-125094147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Niben101Scf09367g00018.1 50 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 94
                              789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1644100IPR009057Homeodomain-like
PROSITE profilePS5129414.184599IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-648100IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-184897IPR006447Myb domain, plants
SMARTSM007176.5E-104997IPR001005SANT/Myb domain
PfamPF002494.2E-105094IPR001005SANT/Myb domain
CDDcd001671.03E-75295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVMALPNLGS FSNPTATASA AATASASNPL SPSDDPSKKI RKPYTITKSR ESWTEPEHDK  60
FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTNEHLPPP RPKRKAAHPY  120
PQKASKSAPA LSPMTASFQA SLPLTDPGFV TRPDASLLPS NPVTVASMPS WTDNSVPPVS  180
LSRVKNDNVR EPGQPVANTH CCSSNESTPG SKSTVLPDFV QVYNFIGSVF DPAVTGHLQK  240
LKKMDRIDVE TVLLLMRNLS INLTSPDFEH HRQLLSSYDM DMEKQCKSSH QLQPT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236926.10.0PREDICTED: protein REVEILLE 6
SwissprotQ8H0W31e-106RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1J6K0C60.0A0A1J6K0C6_NICAT; Protein reveille 6
STRINGXP_009802901.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.28e-93MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]