PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09512g04021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18146.5 Da    PI: 5.1462
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09512g04021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.9e-18957149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              krie+k +r++tf+kRr+g++KKA+EL    da++avi fs  g+++ +
  Niben101Scf09512g04021.1  9 KRIEDKAKRHTTFTKRRQGLFKKAKELAQRLDAQAAVITFSLAGNVFAF 57
                              79******************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.077161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-22375IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-15323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVRTKLEIKR IEDKAKRHTT FTKRRQGLFK KAKELAQRLD AQAAVITFSL AGNVFAFGHP  60
SVDDVVNRYI ATTSAPEGDE IPVHKDTQKK DKDVVTESNV DQEDEETTSF ELPVGDMGME  120
ELEQLEVAMV EMKKKVVDRI NAIISSSKYE DLGLPYTEGS R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263229.11e-102PREDICTED: agamous-like MADS-box protein AGL61 isoform X1
RefseqXP_019263240.11e-102PREDICTED: agamous-like MADS-box protein AGL61 isoform X2
TrEMBLA0A1J6J5V21e-101A0A1J6J5V2_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009617757.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-18AGAMOUS-like 62