PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09555g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 209aa MW: 23306.4 Da PI: 7.5629

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09555g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216	1.2e-66	13	173	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv 86 d+ seq+Cyv+Cn C+t+l+vsvP tslfk+vtvrCGhC++ll l +a++h+++++ + ++ l+ ++++ Niben101Scf09555g02004.1 13 DHLPPSEQLCYVHCNICDTVLVVSVPCTSLFKTVTVRCGHCSNLLP-----GLLLPSANHHFGHTYFSPSHNLLEEITNATPNLL 92 577899*************************************8.....4455566777888887776555554444444444 PP YABBY 87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ +st+ ++ +++pr+p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Niben101Scf09555g02004.1 93 MNQS-NSTDFVLP--TRPGFDDLPRPPVINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPQIQFGL 173 4333.33333332..3567889999*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.3E-64	17	173	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	117	167	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.8E-5	121	168	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSSSTPNSTL SLDHLPPSEQ LCYVHCNICD TVLVVSVPCT SLFKTVTVRC GHCSNLLPGL 60 LLPSANHHFG HTYFSPSHNL LEEITNATPN LLMNQSNSTD FVLPTRPGFD DLPRPPVINR 120 PPEKRQRVPS AYNRFIKEEI QRIKAGNPDI SHREAFSAAA KNWAHFPQIQ FGLMPDQTVK 180 RANVRQQDGE DILMKDGLFT STNVSVSPY

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781194.1	1e-150	PREDICTED: protein YABBY 4-like
Refseq	XP_016477431.1	1e-150	PREDICTED: protein YABBY 4-like
Swissprot	A2X7Q3	1e-73	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-73	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A1S4AL86	1e-149	A0A1S4AL86_TOBAC; protein YABBY 4-like
TrEMBL	A0A1U7X2T9	1e-149	A0A1U7X2T9_NICSY; protein YABBY 4-like
STRING	XP_009781194.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-75	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]