PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09555g04002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 304aa MW: 35312.9 Da PI: 7.8399

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09555g04002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.8	1.2e-28	4	96	20	111
NAM 20 kkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +kk+++k+++l +vike+d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk++++ k+ l+g Niben101Scf09555g04002.1 4 RKKIASKRIDL-DVIKEIDLYKIEPWDLQElcKIGTEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYR-KHILIG 86 7899*****.99**********954555554445**********************************.999* PP NAM 102 lkktLvfykg 111 ++ktLv ++ Niben101Scf09555g04002.1 87 MRKTLVEHQM 96 *****97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.443	1	131	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-29	4	131	IPR003441	NAC domain
Pfam	PF02365	1.2E-7	27	94	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
LDIRKKIASK RIDLDVIKEI DLYKIEPWDL QELCKIGTEE QSDWYFFSHK DKKYPTGTRT 60 NRATKAGFWK ATGRDKAIYR KHILIGMRKT LVEHQMDKNL IGLCMSTDLK QMRMPLPRQE 120 EGWAVCRVFK KKLATTMRRE GEHESLCWYN DDQVSNFMPD FDSPRRFPNP YSATAYHNPQ 180 LAYTNNMQHP PNDAFLQLPQ LESPKVPQSY GSNMNQMVQS NSIYNTNNNS YDHQVVDQVT 240 DWRVLDKFVA SQLSQEDGRS KMETSAACCS SPASEQMNLQ LQNDFKSQEM ASELASSSQV 300 DLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-22	5	132	37	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-22	5	132	37	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-22	5	132	37	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-22	5	132	37	166	NO APICAL MERISTEM PROTEIN
4dul_A	2e-22	5	132	37	166	NAC domain-containing protein 19
4dul_B	2e-22	5	132	37	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804643.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X2
Refseq	XP_009804644.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X2
Refseq	XP_009804645.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X2
Swissprot	Q9FWX2	6e-86	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1U7Z160	0.0	A0A1U7Z160_NICSY; NAC domain-containing protein 7 isoform X2
STRING	XP_009804642.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-84	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]