PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09599g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 209aa MW: 23468.9 Da PI: 7.286

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09599g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	181.2	5.8e-56	6	161	2	159
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCtsllsvnl+kas + hl sl+ + +++l+v++e+++ n Niben101Scf09599g00012.1 6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTSLLSVNLMKASLV---PLHLFASLNLTEQQKLEVDKEDIDAN 87 789999*********************97369************998854...34555666667788899999999999 PP YABBY 86 vekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 +++ +s+ + v+s+ +e++ e+v v++ v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aakn Niben101Scf09599g00012.1 88 KKSVDSEISFVASSD-EEDQIENVVPVYQvVNKPPEKRQRAPSAYNCFIKEEIKRLKTIYPNMTHKQAFSTAAKN 161 999999999999987.555555555577769*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-52	11	162	IPR006780	YABBY protein
SuperFamily	SSF47095	1.06E-5	115	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSALNHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTSL LSVNLMKASL 60 VPLHLFASLN LTEQQKLEVD KEDIDANKKS VDSEISFVAS SDEEDQIENV VPVYQVVNKP 120 PEKRQRAPSA YNCFIKEEIK RLKTIYPNMT HKQAFSTAAK NIEKAVAWET ERCQRLANEV 180 ISAARKSQVP RDSNGFLERK VPSMTPSNE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621066.1	1e-127	PREDICTED: axial regulator YABBY 4 isoform X1
Refseq	XP_016511953.1	1e-127	PREDICTED: axial regulator YABBY 4-like isoform X1
Swissprot	Q9LDT3	5e-60	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1S4DF36	1e-126	A0A1S4DF36_TOBAC; axial regulator YABBY 4-like isoform X1
STRING	XP_009621066.1	1e-126	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-62	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]