PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09644g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 410aa    MW: 45953 Da    PI: 8.391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09644g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30180239159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Niben101Scf09644g00009.1 180 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCFEDMSILITTYEGTHNHP 239
                               58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-30171241IPR003657WRKY domain
PROSITE profilePS5081128.438175241IPR003657WRKY domain
SuperFamilySSF1182909.15E-27177241IPR003657WRKY domain
SMARTSM007742.9E-36180240IPR003657WRKY domain
PfamPF031061.2E-26181239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MFYQDDQLNS TKAQIGEAKE ENERLKSMLS KIMKDYQSLQ MHYQGISQPD HKPQNSKDVI  60
ATSIEQEQVE LVSLSLGRSS REFKQDEKEY DQNKCKDIKK QSKLFDGLEL GLDCRFSPDF  120
TEVAKNYDDS PEKSFEKSKK EHVISHEPCQ QSYLSSKMAR ISGDEDEDFL QQNPQKKARM  180
NDGCQWRKYG QKIAKGNPCP RAYYRCTVSP SCPVRKQVQR CFEDMSILIT TYEGTHNHPL  240
PFSATAMAST TSAAASMLGC TSSSTSQQGI INNANNNLHG FNFTTSNSNN LATHAPNTFY  300
LPKTSISTSQ THPTITLDFT TVPTTTSSST HTFSSQRYSS TSLNFSTLPS TPPSSFINSF  360
KSQVGSSYLG RPCFTQPFTS NNTQNTEGSD GTRNSNMWIQ KKVKSAAPRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-211802411474WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502533.10.0PREDICTED: probable WRKY transcription factor 72 isoform X1
RefseqXP_016502534.10.0PREDICTED: probable WRKY transcription factor 72 isoform X2
TrEMBLA0A1S4CMR30.0A0A1S4CMR3_TOBAC; probable WRKY transcription factor 72 isoform X1
TrEMBLA0A1S4CNJ00.0A0A1S4CNJ0_TOBAC; probable WRKY transcription factor 72 isoform X2
STRINGXP_009798626.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.19e-49WRKY DNA-binding protein 61