PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09659g03018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 219aa    MW: 24531 Da    PI: 4.6382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09659g03018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.22e-082253255
                       AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                              +lg+f+taeeAa+a+++a+  l+g
  Niben101Scf09659g03018.1  2 WLGTFDTAEEAAQAYDEAACLLRG 25
                              9******************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.8E-6139IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-9133IPR016177DNA-binding domain
CDDcd000181.03E-15132No hitNo description
Gene3DG3DSA:3.30.730.105.8E-14134IPR001471AP2/ERF domain
PROSITE profilePS5103211.97133IPR001471AP2/ERF domain
PfamPF008473.4E-4225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MWLGTFDTAE EAAQAYDEAA CLLRGSNTRM NFHNHSPANS ALSMKIRNLL NQKRSLTNIK  60
SKTTPKNHTT STTISSCTSP LSVSNSFSFN TDTSGSRSHQ ETQIFGDAYK PDLSNFMAGF  120
DQMGSSNFDH SSTFSTDFDR ILLDEEVGNF QVSKGGVDNE IGNVEDQIPE FEHMKVQRQI  180
SASLYAMNGV NEYWENIHDC NIDAAFWDLP MLYQMFCPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804161.11e-130PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1U7YQB51e-129A0A1U7YQB5_NICSY; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009804161.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-14related to AP2 11