PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09698g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 204aa    MW: 23343.3 Da    PI: 4.4599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09698g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-1453140197
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               ffkv ++++++k++   +p +f+ e+g +   +  ++le ++g  W+vkl   ++sg+ ++++GW++F +   +  g f++F+++
  Niben101Scf09698g01006.1  53 FFKVILSPHASKLH---IPDEFMMEYGDN--LQDLVSLEVPNGAIWKVKL--HNCSGMAWFKEGWNKFKEYYSIGCGYFLLFRYT 130
                               88888888888876...*********977..6669***************..********************************* PP

                               SSSEE..EEEEE CS
                        B3  86 grsefelvvkvf 97 
                               g+s+f   v +f
  Niben101Scf09698g01006.1 131 GNSRF--SVFIF 140
                               *9999..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2149143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2250150IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.23750143IPR003340B3 DNA binding domain
CDDcd100175.18E-1751141No hitNo description
SMARTSM010198.0E-1253143IPR003340B3 DNA binding domain
PfamPF023627.9E-1253139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSPDEGIDFS RCSLNKQNFN VTLPHEEQTT EKVERHLPEE PKPVKSLETP PQFFKVILSP  60
HASKLHIPDE FMMEYGDNLQ DLVSLEVPNG AIWKVKLHNC SGMAWFKEGW NKFKEYYSIG  120
CGYFLLFRYT GNSRFSVFIF DLSASEIDYP PGPNEDEISP RLNEDLTPEN LCVVAEPEEN  180
PLTCQENSCA ETLLMISHPS RPNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247682.11e-141PREDICTED: B3 domain-containing protein At1g49475-like isoform X1
TrEMBLA0A1J6IXE51e-139A0A1J6IXE5_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009802511.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-28B3 family protein