PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09703g03004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 215aa MW: 24595.9 Da PI: 10.6958

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09703g03004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.8	2.2e-33	49	107	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers++d+++v++tYeg H+h+ Niben101Scf09703g03004.1 49 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSDDTSIVVTTYEGIHTHP 107 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-34	34	109	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-29	41	109	IPR003657	WRKY domain
PROSITE profile	PS50811	30.71	44	109	IPR003657	WRKY domain
SMART	SM00774	2.8E-39	49	108	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	50	107	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGFWWLRLKP KKKKQKRERE PRLKPKKKKQ KRQREPRFAF MTKSEVDHLD DGFRWRKYGQ 60 KAVKNSPFPR SYYRCTTATC GVKKRVERSS DDTSIVVTTY EGIHTHPCPI TPRSNIGILS 120 ETTAYGGSIG GFGGGGGSSL FIPQFQYQAL QQQQTYFQTP TLPINLISTS DSSLYSSQER 180 RFSPSTSFSS SSLARDHGLL QDMVPSQMRT DPKQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-28	39	109	7	77	Probable WRKY transcription factor 4
2lex_A	6e-28	39	109	7	77	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	28	KKKQKREREPRLKPKKKK
2	14	31	QKREREPRLKPKKKKQKR
3	27	33	KKQKRQR
4	28	33	KQKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764101.1	1e-103	PREDICTED: probable WRKY transcription factor 48 isoform X2
Refseq	XP_016497266.1	1e-103	PREDICTED: probable WRKY transcription factor 48 isoform X2
Refseq	XP_016506501.1	1e-103	PREDICTED: probable WRKY transcription factor 48 isoform X2
Swissprot	Q9FGZ4	6e-55	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A1S4C836	1e-102	A0A1S4C836_TOBAC; probable WRKY transcription factor 48 isoform X2
TrEMBL	A0A1S4CZF3	1e-102	A0A1S4CZF3_TOBAC; probable WRKY transcription factor 48 isoform X2
TrEMBL	A0A1U7VGS5	1e-102	A0A1U7VGS5_NICSY; probable WRKY transcription factor 48 isoform X2
STRING	XP_009764098.1	1e-102	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-45	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]