PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09790g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 622aa    MW: 68676.6 Da    PI: 5.7497
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09790g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.45.8e-832616203373
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               ++++++ e + +g++++aq +Larl+++ sp g+p++R a+yf+eAL    +   +  + ++pp+  ++ + + ++ a+k+fse+
  Niben101Scf09790g00012.1 261 DQIFQASELLLAGQFSNAQMILARLNQQLSPIGKPFKRSAFYFKEALLLPFLL--PCASTSFPPRIPTPFDCVLKMDAYKAFSEI 343
                               67899999999************************************998887..667777999999999*************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP+++f ++t Nq Ilea+  ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L+ fA+ +
  Niben101Scf09790g00012.1 344 SPLIQFMNFTSNQPILEALGDAKEIHIIDFDIGCGAQWSSFMQELRSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDV 428
                               ************************************************************************************* PP

                      GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                               g++fe +++  ++++  +  l++Lr ++ Ea+a+n+ +   +      +     +++L+++k+lsPkvvv  e+ +++ + ++ +
  Niben101Scf09790g00012.1 429 GIRFELEIINLDSFDpkTYPLSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERAELPLKH 507
                               ********9777654115678999************99555444..344....456***************************** PP

                      GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                               ++l al+yy +l+ s++a    + e  +k+Er ll+++i+n+v  + ++      ++  Wr+ + +aGF+pv++s+ a+ qa+++
  Niben101Scf09790g00012.1 508 HLLLALQYYEMLLASIDAA-NLTPEIGKKIERSLLQPSIENMVLGRLRS----PDRMPPWRNLFASAGFSPVEFSNMAEIQAECV 587
                               ****************555.34778999****************99988....9999**************************** PP

                      GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++++++ g++ve+++ slvl+Wk+++L+s+ aW
  Niben101Scf09790g00012.1 588 VKRTQVGGFHVEKRQTSLVLCWKQQELLSILAW 620
                               ********************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.321233601IPR005202Transcription factor GRAS
PfamPF035142.0E-80261620IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MLVTTSHSPS ASSCSYGGNM GEKSDLGFGD LDNLLPELAG SDQTLFRCIS GDMEDPSVSL  60
KQLLQGGNEN ADLGCGVSVQ SSGFEVSAAG SLAHTDNVSF SNSNLLLNAN IEKIVSVINS  120
DNKQNVNFEH LNVNLLARNL PPALSFQEQQ SEQSSAYVNM LGSLSYDISQ EQPPPKRHNS  180
GMLGSSLSAL LPEVPFFDSS GDLLLRKQPL GQTRQQVNLL PFHQFQQKPL IVPKLEAAAG  240
GGNGNLMVLR HQQQEQQFIY DQIFQASELL LAGQFSNAQM ILARLNQQLS PIGKPFKRSA  300
FYFKEALLLP FLLPCASTSF PPRIPTPFDC VLKMDAYKAF SEISPLIQFM NFTSNQPILE  360
ALGDAKEIHI IDFDIGCGAQ WSSFMQELRS SNRKATSLKI TAFVSPSTHH SVEIGIMHES  420
LTLFANDVGI RFELEIINLD SFDPKTYPLS SLRSSECEAI AINFPIWSIS SCLFAFPSLL  480
HCMKQLSPKV VVSLERGCER AELPLKHHLL LALQYYEMLL ASIDAANLTP EIGKKIERSL  540
LQPSIENMVL GRLRSPDRMP PWRNLFASAG FSPVEFSNMA EIQAECVVKR TQVGGFHVEK  600
RQTSLVLCWK QQELLSILAW SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2625262112379Protein SCARECROW
5b3h_A3e-2625262111378Protein SCARECROW
5b3h_D3e-2625262111378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437509.10.0PREDICTED: scarecrow-like protein 6 isoform X1
TrEMBLA0A1S3XCF70.0A0A1S3XCF7_TOBAC; scarecrow-like protein 6 isoform X1
STRINGXP_009803484.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-90GRAS family protein