PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09790g00019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 720aa MW: 78749.5 Da PI: 5.9335

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09790g00019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	275.2	2e-84	359	719	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++++++ e + +g++++aq +Larl+++ sp+g+p++R+a+yf+eAL+ + + ++ ++pp+ ++ + + ++ a+k+fsev Niben101Scf09790g00019.1 359 DQIFQASELLLAGQFSNAQMILARLNQQLSPNGKPFKRAAFYFKEALQLPFLL--PCTSTSFPPRIPAPFDCVLKMDAYKAFSEV 441 57899999999***********************************99998..777788999999************ PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 sP+++f ++t NqaI ea+ ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ + Niben101Scf09790g00019.1 442 SPLIQFMNFTSNQAIFEALGDAKEIHIIDFDIGCGAQWSSFMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDV 526 ********************************************************************************* PP GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 g++fe +v+ ++++ + l++Lr ++ E +a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ + Niben101Scf09790g00019.1 527 GIRFELEVINLDSFDpkTYPLSSLRSSECEEIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKH 605 ****977765411567899*********99555444..344....456************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 ++l+al+yy +l+ s++a + + +k+Er ll+ +i+n+v + ++ + Wr+ + +aGF+p ++s+ ++ qa++l Niben101Scf09790g00019.1 606 HLLHALQYYETLLASIDAA-NLTPDVGRKIERSLLQSSIENMVLGRLRS----PDRIPPWRNLFASAGFSPFAFSNLTEIQAECL 685 ************555.34778999************99988....999************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ ++ g++ve+++ slvl+Wk+++L+s+ +Wr Niben101Scf09790g00019.1 686 VKRSQVGGFHVEKRQSSLVLCWKQQELLSALCWR 719 *******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.966	331	699	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-82	359	719	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MIVIPQSNNL AGAKGVLGVS SYVPSISSSP EAAICNKGLN FTRNESVSVL DTRSPSPSAS 60 SSSCSYGGQY AGNNGVPGAG AEKIDGRKEE LVTELQPLSF GLEPEKFNLG FGDLDNLLPE 120 LAGSDQTIFR WISGDMEDPS VSLKQLLQGG NANADLGCGV SVAGSFACTD NISFSRSDIS 180 LDANIEKIGS VVIDSNDRPS NNFENLNVNL LAKSLPPALS FQEQQSEQKP QISCPQIMAN 240 QTQFQNSAYV NLFGSSPYNM NQEQPPPKRH NSGILGSSLG FLLPKVPFFN PSGDLLLRKH 300 PLGQMQQQVN LLPPHQFQST PLFVPKLEAA GGGGSAGGGG NGNLMVPRHQ QQEQQFIYDQ 360 IFQASELLLA GQFSNAQMIL ARLNQQLSPN GKPFKRAAFY FKEALQLPFL LPCTSTSFPP 420 RIPAPFDCVL KMDAYKAFSE VSPLIQFMNF TSNQAIFEAL GDAKEIHIID FDIGCGAQWS 480 SFMQELPSSN RKATSLKITA FVSPSTHHSV EIGIMHESLT LFANDVGIRF ELEVINLDSF 540 DPKTYPLSSL RSSECEEIAI NFPIWSISSC LFAFPSLLHC MKQLSPKVVV SLERGCERTE 600 LPLKHHLLHA LQYYETLLAS IDAANLTPDV GRKIERSLLQ SSIENMVLGR LRSPDRIPPW 660 RNLFASAGFS PFAFSNLTEI QAECLVKRSQ VGGFHVEKRQ SSLVLCWKQQ ELLSALCWRC

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MIVIPQSNNL AGAKGVLGVS SYVPSISSSP EAAICNKGLN FTRNESVSVL DTRSPSPSAS  60
SSSCSYGGQY AGNNGVPGAG AEKIDGRKEE LVTELQPLSF GLEPEKFNLG FGDLDNLLPE  120
LAGSDQTIFR WISGDMEDPS VSLKQLLQGG NANADLGCGV SVAGSFACTD NISFSRSDIS  180
LDANIEKIGS VVIDSNDRPS NNFENLNVNL LAKSLPPALS FQEQQSEQKP QISCPQIMAN  240
QTQFQNSAYV NLFGSSPYNM NQEQPPPKRH NSGILGSSLG FLLPKVPFFN PSGDLLLRKH  300
PLGQMQQQVN LLPPHQFQST PLFVPKLEAA GGGGSAGGGG NGNLMVPRHQ QQEQQFIYDQ  360
IFQASELLLA GQFSNAQMIL ARLNQQLSPN GKPFKRAAFY FKEALQLPFL LPCTSTSFPP  420
RIPAPFDCVL KMDAYKAFSE VSPLIQFMNF TSNQAIFEAL GDAKEIHIID FDIGCGAQWS  480
SFMQELPSSN RKATSLKITA FVSPSTHHSV EIGIMHESLT LFANDVGIRF ELEVINLDSF  540
DPKTYPLSSL RSSECEEIAI NFPIWSISSC LFAFPSLLHC MKQLSPKVVV SLERGCERTE  600
LPLKHHLLHA LQYYETLLAS IDAANLTPDV GRKIERSLLQ SSIENMVLGR LRSPDRIPPW  660
RNLFASAGFS PFAFSNLTEI QAECLVKRSQ VGGFHVEKRQ SSLVLCWKQQ ELLSALCWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-25	363	718	25	378	Protein SCARECROW
5b3h_A	1e-25	363	718	24	377	Protein SCARECROW
5b3h_D	1e-25	363	718	24	377	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019252370.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A1J6IGI6	0.0	A0A1J6IGI6_NICAT; Scarecrow-like protein 6
STRING	XP_009803487.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-88	GRAS family protein