PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09828g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 690aa    MW: 75417.1 Da    PI: 6.371
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09828g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28200253155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ eLH++Fv av+qL G ekA+Pk+il++m+v+gLt+e+v+SHLQkYRl
  Niben101Scf09828g00004.1 200 KPRVVWSIELHRKFVAAVNQL-GLEKAVPKRILDMMNVDGLTRENVASHLQKYRL 253
                               79*******************.********************************8 PP
2Response_reg78.91.7e-26181261109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g++
  Niben101Scf09828g00004.1  18 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARTALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDS 100
                               799********************.***************999889*******************87754.558************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                                ++ + +  Ga d+l+Kp+  eel +
  Niben101Scf09828g00004.1 101 RLVMKGITHGACDYLVKPVRLEELKN 126
                               ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.0E-1661686IPR017053Response regulator B-type, plant
SuperFamilySSF521721.42E-3515144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-4215149No hitNo description
SMARTSM004484.9E-3216128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.15217132IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-2418126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.47E-2719132No hitNo description
SuperFamilySSF466891.4E-19197257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-30197258IPR009057Homeodomain-like
PROSITE profilePS5129411.91197256IPR017930Myb domain
TIGRFAMsTIGR015572.1E-24200253IPR006447Myb domain, plants
PfamPF002495.9E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MTVEERENND NFPIGMRVLA VDDDPICLKL LDGLLRKCQY HVTTTSQART ALKMLRENRD  60
RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGDS RLVMKGITHG ACDYLVKPVR  120
LEELKNIWQH VIRKKKVEPK NHIKSDDQDK ANQGGGEGGK GPQFSGNADQ NGKLNKKRKD  180
EEYESDENGN DDDDPTTQKK PRVVWSIELH RKFVAAVNQL GLEKAVPKRI LDMMNVDGLT  240
RENVASHLQK YRLYLKRISS EASQQANMVA ALGGKDSAYM RMGSLDGLGG FRTLAGSGRY  300
GQASLSSSYA SGGMLGRLNS PAGVSLRSLA SSPLLQPNHG QSLCNSMNSF TKLNPNVPPV  360
SQNASLFHGI PASLELDQLQ QSKHAIRMGE LNPLDEHGLL TAASSTFTDS RSVVANSNSS  420
LSNVLNNPIL LQVNSQQPLT GGGFVNQPSI NCTSFSSDAF NTGASGSSNF LDHSRYTENC  480
QNSIQAVKFQ SSSFPSTEYS HLLQDRVRDN SSPAGPYLQN STVDFSSSTI VSQPFEASRG  540
ETQCLESLGG VQIMNQAHCQ RWPDQNQHYS QNSNYIFGNM SSQVSSNGGV TSLPHSMDQN  600
NEVVYRGVDV SLIGRSNGYS SALMQHSPDS RTRTNEDYLL ETTKQQGGVL PQGYGSLDDL  660
MSAMKREQQG GAMLEGGEFG FDAYSFGSGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-26196259164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757804.10.0PREDICTED: two-component response regulator ARR12-like
RefseqXP_016472170.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLA0A1S4A6C40.0A0A1S4A6C4_TOBAC; Two-component response regulator
TrEMBLA0A1U7V6D80.0A0A1U7V6D8_NICSY; Two-component response regulator
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-128response regulator 12